If more than 50 genes/sequences are provided as input, then the associated running time can take some time. Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes. After processing you will be send an email with a link to the created phylogenetic tree.
The selection modi are exclusive: please choose either Gene selection or Species selection.
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":"";
$selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":"";
$num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0;
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ) $local_species = 'acertr' $disabled = '' $selected = ''
include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ) $local_species = 'ach' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ) $local_species = 'aar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ) $local_species = 'amhyb' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ) $local_species = 'atr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ) $local_species = 'aag' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ) $local_species = 'aox' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ) $local_species = 'aly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ) $local_species = 'ath' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ) $local_species = 'arhy' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ) $local_species = 'ama' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ) $local_species = 'bvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ) $local_species = 'bca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ) $local_species = 'bna' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ) $local_species = 'bol' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ) $local_species = 'bra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ) $local_species = 'camsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ) $local_species = 'cansat' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ) $local_species = 'cru' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ) $local_species = 'can' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ) $local_species = 'chi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ) $local_species = 'cpa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ) $local_species = 'cfa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ) $local_species = 'cil' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ) $local_species = 'cde' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ) $local_species = 'cbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ) $local_species = 'cqu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ) $local_species = 'cre' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ) $local_species = 'car' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ) $local_species = 'cla' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ) $local_species = 'ccl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ) $local_species = 'ccan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ) $local_species = 'col' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ) $local_species = 'cav' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ) $local_species = 'cme' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ) $local_species = 'csa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ) $local_species = 'dca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ) $local_species = 'din' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ) $local_species = 'dzi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ) $local_species = 'eca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ) $local_species = 'egut' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ) $local_species = 'egr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ) $local_species = 'esa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ) $local_species = 'fve' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ) $local_species = 'fan' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ) $local_species = 'gma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ) $local_species = 'ghi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ) $local_species = 'gra' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ) $local_species = 'han' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ) $local_species = 'hma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ) $local_species = 'lsa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ) $local_species = 'lonja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ) $local_species = 'lja' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ) $local_species = 'lal' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ) $local_species = 'mbi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ) $local_species = 'mdo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ) $local_species = 'mes' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ) $local_species = 'mpo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ) $local_species = 'mtr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ) $local_species = 'mco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ) $local_species = 'nnu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ) $local_species = 'nta' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ) $local_species = 'oeu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ) $local_species = 'osa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ) $local_species = 'pso' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ) $local_species = 'pax' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ) $local_species = 'pvu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ) $local_species = 'ppa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ) $local_species = 'psa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ) $local_species = 'ptr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ) $local_species = 'pco' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ) $local_species = 'ppe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ) $local_species = 'pgr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ) $local_species = 'qlo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ) $local_species = 'rsi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ) $local_species = 'rch' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ) $local_species = 'sbr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ) $local_species = 'sbo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ) $local_species = 'shi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ) $local_species = 'spa' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ) $local_species = 'sed' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ) $local_species = 'smo' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ) $local_species = 'sun' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ) $local_species = 'sgi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ) $local_species = 'sci' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ) $local_species = 'sly' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ) $local_species = 'spe' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ) $local_species = 'stu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ) $local_species = 'sas' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ) $local_species = 'tha' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ) $local_species = 'tca' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ) $local_species = 'tpr' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ) $local_species = 'twi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ) $local_species = 'tar' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ) $local_species = 'ugi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ) $local_species = 'vma' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ) $local_species = 'vpl' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ) $local_species = 'vmu' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ) $local_species = 'vvi' $disabled = '' $selected = '' $num_hits = (int) 1
Warning (2): count(): Parameter must be an array or an object that implements Countable [APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33]Code Context $disabled = (!array_key_exists($local_species,$species_gene_counts))?"disabled":""; $selected = (isset($selected_species) && array_key_exists($local_species,$selected_species))?"checked='checked'":""; $num_hits = (array_key_exists($local_species,$species_gene_counts))?count($species_gene_counts[$local_species]):0; $viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp, line 33 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/gf_data_settings.ctp, line 37 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Elements/analysis/phylogenetics_module/parameter_selection.ctp, line 64 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933 View::_renderElement() - CORE/Cake/View/View.php, line 1224 View::element() - CORE/Cake/View/View.php, line 418 include - APP/View/Analysis/custom_tree_creation.ctp, line 27 View::_evaluate() - CORE/Cake/View/View.php, line 971 View::_render() - CORE/Cake/View/View.php, line 933
$viewFile = '/www/bioinformatics01_ro/plaza/_dev_instances/feedback/app/View/Elements/analysis/phylogenetics_module/gf_data_settings_species_selection.ctp' $dataForView = array( 'sidebar_info' => array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ), 'sidebar' => 'gene_family_sidebar', 'navigation_bar_info' => array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ), 'allowed_extra_sequences_types' => array( 'aa' => 'Protein', 'dna' => 'DNA' ), 'allowed_editing_methods' => array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ), 'allowed_tree_programs' => array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ), 'allowed_msa_programs' => array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ), 'allowed_number_blasthits' => array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ), 'gf_genes' => array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ), 'gf_id' => 'HOM05D000979', 'gf_types_information' => array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ), 'gf_types_configuration' => array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ), 'all_species' => array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ), 'allow_async_use' => true, 'sidebar_information' => array( 'type' => 'gf', 'id' => 'HOM05D000979' ), 'data_identifier' => 'HOM05D000979', 'data_type' => 'gf_id' ) $sidebar_info = array( 'gf_id' => 'HOM05D000979', 'msa_exists' => array( 'full' => true, 'edited' => true ), 'tree_exists' => true, 'num_genes' => '614', 'num_species' => '100' ) $sidebar = 'gene_family_sidebar' $navigation_bar_info = array( 'num_colinearity_runs' => (int) 1, 'num_colinearity_with_dating_runs' => (int) 0, 'num_functional_clusters_runs' => (int) 6, 'has_pan_genomes' => false ) $allowed_extra_sequences_types = array( 'aa' => 'Protein', 'dna' => 'DNA' ) $allowed_editing_methods = array( 'column' => 'Positions only', 'row' => 'Genes only', 'column_row' => 'Positions and Genes', 'none' => 'No editing' ) $allowed_tree_programs = array( 'fasttree' => 'FastTree', 'iqtree' => 'IQ-TREE (includes model testing)', 'raxml' => 'RAxML', 'phyml' => 'PhyML' ) $allowed_msa_programs = array( 'muscle' => 'MUSCLE', 'mafft' => 'MAFFT' ) $allowed_number_blasthits = array( (int) 0 => 'all', (int) 1 => (int) 20, (int) 2 => (int) 10, (int) 3 => (int) 5, (int) 4 => (int) 1 ) $gf_genes = array( 'A02p27900' => 'bna', 'A03p42070' => 'bna', 'A05p27560' => 'bna', 'A06p02390' => 'bna', 'A08p02650' => 'bna', 'A08p24770' => 'bna', 'A09p36520' => 'bna', 'A09p38480' => 'bna', 'A09p38490' => 'bna', 'Aa31LG10G3180' => 'aar', 'Aa31LG5G3530' => 'aar', 'Aa31LG6G5660' => 'aar', 'Aa31LG8G7860' => 'aar', 'AagrBONN_evm.TU.Sc2ySwM_228.754' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_344.3650' => 'aag', 'AagrBONN_evm.TU.Sc2ySwM_362.1616' => 'aag', 'Actinidia00642' => 'ach', 'Actinidia04491' => 'ach', 'Actinidia07692' => 'ach', 'Actinidia21644' => 'ach', 'Actinidia21875' => 'ach', 'Actinidia33039' => 'ach', 'Actinidia33040' => 'ach', 'Actinidia38799' => 'ach', 'Actinidia39570' => 'ach', 'Ah.08g217700' => 'amhyb', 'Ah.09g232600' => 'amhyb', 'Ah.15g094380' => 'amhyb', 'AL1G40950' => 'aly', 'AL1G43890' => 'aly', 'AL1G59490' => 'aly', 'AL3G35110' => 'aly', 'AL8G16610' => 'aly', 'Aqoxy2G03535' => 'aox', 'Aqoxy3G01002' => 'aox', 'Aqoxy3G03093' => 'aox', 'Aqoxy4G00015' => 'aox', 'Aqoxy7G02877' => 'aox', 'Aqoxy7G02880' => 'aox', 'arahy.Tifrunner.gnm1.ann1.1E0YQ2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.2UM1UW' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.4KY3H2' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.A5MUPV' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CGIH3L' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.CXU575' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.D6AVJJ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.DZ7BFZ' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ECXW3T' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.F4SDAN' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.G9KLCC' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.S7ZTA4' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.X6L2LG' => 'arhy', 'arahy.Tifrunner.gnm1.ann1.ZU426T' => 'arhy', 'AT1G27520' => 'ath', 'AT1G30000' => 'ath', 'AT1G51590' => 'ath', 'AT3G21160' => 'ath', 'AT5G43710' => 'ath', 'ATR0044G024' => 'atr', 'ATR0580G199' => 'atr', 'ATR0665G580' => 'atr', 'ATR1149G103' => 'atr', 'Atru.chr1.2706' => 'acertr', 'Atru.chr10.1239' => 'acertr', 'Atru.chr4.2281' => 'acertr', 'Atru.chr9.2408' => 'acertr', 'Atru.chr9.2422' => 'acertr', 'AUR62001357' => 'cqu', 'AUR62008279' => 'cqu', 'AUR62025646' => 'cqu', 'AUR62025647' => 'cqu', 'AUR62030204' => 'cqu', 'AUR62031039' => 'cqu', 'AUR62032026' => 'cqu', 'AUR62032723' => 'cqu', 'AUR62039779' => 'cqu', 'BcaB03g12188' => 'bca', 'BcaB04g17189' => 'bca', 'BcaB04g19146' => 'bca', 'BcaB06g26186' => 'bca', 'BcaB07g30563' => 'bca', 'BcaB07g32601' => 'bca', 'BcaB07g33608' => 'bca', 'BcaC01g00148' => 'bca', 'BcaC01g01282' => 'bca', 'BcaC01g03523' => 'bca', 'BcaC03g16587' => 'bca', 'BcaC05g26569' => 'bca', 'BcaC05g26753' => 'bca', 'BcaC05g27011' => 'bca', 'BcaC05g28257' => 'bca', 'BcaC08g43320' => 'bca', 'BolC2t10449H' => 'bol', 'BolC3t17434H' => 'bol', 'BolC3t19886H' => 'bol', 'BolC3t21341H' => 'bol', 'BolC5t31335H' => 'bol', 'BolC5t31594H' => 'bol', 'BolC5t32985H' => 'bol', 'BolC6t35781H' => 'bol', 'BraA02t07828Z' => 'bra', 'BraA03t13361Z' => 'bra', 'BraA05t21645Z' => 'bra', 'BraA06t23446Z' => 'bra', 'BraA08t32304Z' => 'bra', 'BraA08t34431Z' => 'bra', 'BraA09t39173Z' => 'bra', 'BraA09t39355Z' => 'bra', 'C02p44060' => 'bna', 'C03p51490' => 'bna', 'C03p76300' => 'bna', 'C03p90190' => 'bna', 'C05p26210' => 'bna', 'C05p28760' => 'bna', 'C05p42660' => 'bna', 'C06p06710' => 'bna', 'C09p49600' => 'bna', 'CAN.G308.7' => 'can', 'CAN.G589.9' => 'can', 'CAN.G702.40' => 'can', 'CAN.G790.20' => 'can', 'CAN.G853.9' => 'can', 'CAN.G950.13' => 'can', 'CAN.G950.14' => 'can', 'CANSAT01G2086' => 'cansat', 'CANSAT35G1475' => 'cansat', 'CANSAT78G0759' => 'cansat', 'CANSAT80G0008' => 'cansat', 'CARHR027120' => 'chi', 'CARHR029390' => 'chi', 'CARHR041740' => 'chi', 'CARHR097020' => 'chi', 'CARHR179910' => 'chi', 'Carub.0001s2607' => 'cru', 'Carub.0001s2825' => 'cru', 'Carub.0001s4044' => 'cru', 'Carub.0003s2109' => 'cru', 'Carub.0008s0492' => 'cru', 'Ca_00546_v3' => 'car', 'Ca_09876_v3' => 'car', 'Ca_20498_v3' => 'car', 'Ca_21257_v3' => 'car', 'Ca_21893_v3' => 'car', 'CBR_g23002' => 'cbr', 'CBR_g3890' => 'cbr', 'CBR_g3902' => 'cbr', 'CBR_g643' => 'cbr', 'Cc00_g08430' => 'ccan', 'Cc00_g15690' => 'ccan', 'Cc00_g35180' => 'ccan', 'Cc03_g04650' => 'ccan', 'Cc04_g00310' => 'ccan', 'Cc04_g13530' => 'ccan', 'Cc09_g00730' => 'ccan', 'Cc09_g00740' => 'ccan', 'Cc09_g08640' => 'ccan', 'Cc11_g00970' => 'ccan', 'CDE02G4461' => 'cde', 'CDE04G1261' => 'cde', 'CDE06G0530' => 'cde', 'CDE06G1265' => 'cde', 'CDE06G1664' => 'cde', 'CDE07G0897' => 'cde', 'CDE09G0565' => 'cde', 'CDE11G0191' => 'cde', 'Cfa002139' => 'cfa', 'Cfa008397' => 'cfa', 'Cfa019072' => 'cfa', 'Cfa022793' => 'cfa', 'Cfa024031' => 'cfa', 'Cfa024714' => 'cfa', 'Cfa027182' => 'cfa', 'Ciclev10004553m.g' => 'ccl', 'Ciclev10014607m.g' => 'ccl', 'Ciclev10019471m.g' => 'ccl', 'Ciclev10025230m.g' => 'ccl', 'CiPaw.01G089300' => 'cil', 'CiPaw.02G117700' => 'cil', 'CiPaw.07G198100' => 'cil', 'CiPaw.09G124200' => 'cil', 'CiPaw.11G031100' => 'cil', 'ClCG01G024580' => 'cla', 'ClCG05G004680' => 'cla', 'ClCG06G016740' => 'cla', 'ClCG09G001580' => 'cla', 'COL.COLO4_04325' => 'col', 'COL.COLO4_15768' => 'col', 'COL.COLO4_23436' => 'col', 'COL.COLO4_31078' => 'col', 'COL.COLO4_31190' => 'col', 'Cpa.g.sc110.19' => 'cpa', 'Cpa.g.sc1240.2' => 'cpa', 'Cpa.g.sc166.13' => 'cpa', 'Cpa.g.sc58.25' => 'cpa', 'Cpa.g.sc58.33' => 'cpa', 'Cpa.g.sc67.12' => 'cpa', 'Cpa.g.sc95.1' => 'cpa', 'Cpa.g.sc95.2' => 'cpa', 'Cre06.g301600' => 'cre', 'Cre07.g336600' => 'cre', 'CsaV3_1G001780' => 'csa', 'CsaV3_3G012670' => 'csa', 'CsaV3_6G051700' => 'csa', 'CsaV3_7G033750' => 'csa', 'CSS0007681' => 'camsi', 'CSS0007812' => 'camsi', 'CSS0007971' => 'camsi', 'CSS0009818' => 'camsi', 'CSS0014095' => 'camsi', 'CSS0020489' => 'camsi', 'CSS0023139' => 'camsi', 'CSS0034076' => 'camsi', 'CSS0036928' => 'camsi', 'CSS0042313' => 'camsi', 'CSS0046535' => 'camsi', 'DCAR_007892' => 'dca', 'DCAR_016083' => 'dca', 'DCAR_022619' => 'dca', 'DCAR_024201' => 'dca', 'DCAR_026114' => 'dca', 'Dinv10233' => 'din', 'Dinv20349' => 'din', 'Dinv20695' => 'din', 'Dinv30740' => 'din', 'Dinv32259' => 'din', 'Dinv41188' => 'din', 'Dinv44615' => 'din', 'Duzib084G1093' => 'dzi', 'Duzib150G1335' => 'dzi', 'Duzib160G0933' => 'dzi', 'Duzib192G0962' => 'dzi', 'Duzib235G1132' => 'dzi', 'Duzib235G1345' => 'dzi', 'ECA233G2003' => 'eca', 'ECA236G2602' => 'eca', 'ECA247G1935' => 'eca', 'EL10Ac3g06835' => 'bvu', 'EL10Ac5g10823' => 'bvu', 'EL10Ac7g18181' => 'bvu', 'EL10Ac8g19694' => 'bvu', 'Eucgr.B00341' => 'egr', 'Eucgr.C00102' => 'egr', 'Eucgr.D00298' => 'egr', 'Eucgr.F04021' => 'egr', 'Eucgr.H00217' => 'egr', 'FAN02G2303' => 'fan', 'FAN05G0491' => 'fan', 'FAN05G1020' => 'fan', 'FAN05G5666' => 'fan', 'FAN07G2261' => 'fan', 'FAN08G3080' => 'fan', 'FAN09G1872' => 'fan', 'FAN11G1811' => 'fan', 'FAN12G0043' => 'fan', 'FAN12G0527' => 'fan', 'FAN13G2830' => 'fan', 'FAN14G2693' => 'fan', 'FAN16G1772' => 'fan', 'FAN17G1338' => 'fan', 'FAN17G2213' => 'fan', 'FAN18G1931' => 'fan', 'FAN21G1813' => 'fan', 'FAN22G1130' => 'fan', 'FAN22G1971' => 'fan', 'FAN22G2375' => 'fan', 'FvH4_3g05640' => 'fve', 'FvH4_4g01870' => 'fve', 'FvH4_4g02250' => 'fve', 'FvH4_4g07060' => 'fve', 'FvH4_5g16460' => 'fve', 'FvH4_6g37151' => 'fve', 'Glyma.07G020200' => 'gma', 'Glyma.08G221900' => 'gma', 'Glyma.10G179900' => 'gma', 'Glyma.13G101166' => 'gma', 'Glyma.13G101232' => 'gma', 'Glyma.13G217900' => 'gma', 'Glyma.15G094500' => 'gma', 'Glyma.17G058500' => 'gma', 'Glyma.17G092900' => 'gma', 'Glyma.20G210550' => 'gma', 'Glyma.U031122' => 'gma', 'Glyma.U031507' => 'gma', 'Gohir.A02G090500' => 'ghi', 'Gohir.A05G148500' => 'ghi', 'Gohir.A06G197000' => 'ghi', 'Gohir.A09G170400' => 'ghi', 'Gohir.A09G222200' => 'ghi', 'Gohir.A10G003100' => 'ghi', 'Gohir.D02G107700' => 'ghi', 'Gohir.D05G151000' => 'ghi', 'Gohir.D06G204500' => 'ghi', 'Gohir.D09G166100' => 'ghi', 'Gohir.D09G224300' => 'ghi', 'Gohir.D10G003100' => 'ghi', 'Gorai.005G122200' => 'gra', 'Gorai.006G187900' => 'gra', 'Gorai.006G245800' => 'gra', 'Gorai.009G155100' => 'gra', 'Gorai.010G238600' => 'gra', 'Gorai.011G003500' => 'gra', 'GSVIVG01007818001' => 'vvi', 'GSVIVG01018097001' => 'vvi', 'GSVIVG01021446001' => 'vvi', 'GSVIVG01021447001' => 'vvi', 'GSVIVG01029306001' => 'vvi', 'GSVIVG01029601001' => 'vvi', 'GSVIVG01029609001' => 'vvi', 'GSVIVG01029623001' => 'vvi', 'GSVIVG01035174001' => 'vvi', 'HanXRQChr02g0044201' => 'han', 'HanXRQChr04g0116441' => 'han', 'HanXRQChr10g0311451' => 'han', 'HanXRQChr12g0359901' => 'han', 'HanXRQChr15g0468671' => 'han', 'HanXRQChr15g0481961' => 'han', 'Haze_05588' => 'cav', 'Haze_07442' => 'cav', 'Haze_16290' => 'cav', 'Haze_26878' => 'cav', 'Haze_26880' => 'cav', 'Haze_26948' => 'cav', 'Hma1.2p1_0286F.1_g114050' => 'hma', 'Hma1.2p1_0517F.1_g170675' => 'hma', 'HPP92_010293' => 'vpl', 'HPP92_017546' => 'vpl', 'HPP92_017566' => 'vpl', 'HPP92_018438' => 'vpl', 'HPP92_021763' => 'vpl', 'HPP92_021963' => 'vpl', 'HPP92_026763' => 'vpl', 'Hund05682' => 'sun', 'Hund09408' => 'sun', 'Hund18603' => 'sun', 'Hund19227' => 'sun', 'Lalb_Chr01g0011771' => 'lal', 'Lalb_Chr02g0150021' => 'lal', 'Lalb_Chr04g0264631' => 'lal', 'Lalb_Chr07g0180671' => 'lal', 'Lalb_Chr12g0201401' => 'lal', 'Lalb_Chr12g0201411' => 'lal', 'Lalb_Chr13g0299921' => 'lal', 'Lalb_Chr15g0086861' => 'lal', 'Lj1C1187G5' => 'lonja', 'Lj2A306G66' => 'lonja', 'Lj3g0008081' => 'lja', 'Lj4g0012494' => 'lja', 'Lj4g0017712' => 'lja', 'Lj5A24G44' => 'lonja', 'Lj5g0023126' => 'lja', 'Lj6C654G8' => 'lonja', 'Lj6g0003739' => 'lja', 'Lj9C453T5' => 'lonja', 'Lsat_1_v5_gn_1_12180' => 'lsa', 'Lsat_1_v5_gn_4_88540' => 'lsa', 'Lsat_1_v5_gn_5_137360' => 'lsa', 'Lsat_1_v5_gn_5_67540' => 'lsa', 'Lsat_1_v5_gn_7_115921' => 'lsa', 'Lsat_1_v5_gn_7_27241' => 'lsa', 'Manes.03G080300' => 'mes', 'Manes.03G169900' => 'mes', 'Manes.06G018450' => 'mes', 'Manes.06G101300' => 'mes', 'Manes.15G120800' => 'mes', 'Manes.17G069200' => 'mes', 'Mapoly0005s0011' => 'mpo', 'Mapoly0010s0002' => 'mpo', 'Mapoly0113s0031' => 'mpo', 'Mapoly0181s0015' => 'mpo', 'MBI05_g05607_MAGBIO' => 'mbi', 'MBI07_g26355_MAGBIO' => 'mbi', 'MBI08_g18169_MAGBIO' => 'mbi', 'MBI14_g10719_MAGBIO' => 'mbi', 'MBI15_g03390_MAGBIO' => 'mbi', 'MBI16_g46831_MAGBIO' => 'mbi', 'MCO03G431' => 'mco', 'MCO11G392' => 'mco', 'MCO15G188' => 'mco', 'MD05G1284300' => 'mdo', 'MD06G1179000' => 'mdo', 'MD06G1179200' => 'mdo', 'MD06G1179500' => 'mdo', 'MD06G1179700' => 'mdo', 'MD09G1160700' => 'mdo', 'MD10G1262700' => 'mdo', 'MD13G1240100' => 'mdo', 'MD14G1185600' => 'mdo', 'MD16G1206300' => 'mdo', 'MD17G1146500' => 'mdo', 'Medtr1g076250' => 'mtr', 'Medtr1g076280' => 'mtr', 'Medtr2g019520' => 'mtr', 'Medtr4g008140' => 'mtr', 'Medtr4g106370' => 'mtr', 'Medtr4g127310' => 'mtr', 'MELO3C006478.2' => 'cme', 'MELO3C007137.2' => 'cme', 'MELO3C017118.2' => 'cme', 'MELO3C024288.2' => 'cme', 'Migut.G00418' => 'egut', 'Migut.I00053' => 'egut', 'Migut.I01183' => 'egut', 'Migut.M00912' => 'egut', 'MSTRG.10888' => 'ama', 'MSTRG.4090' => 'ama', 'MSTRG.7484' => 'ama', 'Nitab4.5_0000322g0230' => 'nta', 'Nitab4.5_0001286g0080' => 'nta', 'Nitab4.5_0001497g0110' => 'nta', 'Nitab4.5_0001642g0070' => 'nta', 'Nitab4.5_0001691g0130' => 'nta', 'Nitab4.5_0002275g0040' => 'nta', 'Nitab4.5_0002661g0110' => 'nta', 'Nitab4.5_0003757g0020' => 'nta', 'Nitab4.5_0005812g0010' => 'nta', 'Nitab4.5_0012506g0010' => 'nta', 'Nitab4.5_0012986g0010' => 'nta', 'Nn3g16991' => 'nnu', 'Nn3g19504' => 'nnu', 'Nn3g20760' => 'nnu', 'Nn4g22903' => 'nnu', 'Nn8g40675' => 'nnu', 'Oeu007575.1' => 'oeu', 'Oeu016338.1' => 'oeu', 'Oeu024599.3' => 'oeu', 'Oeu042445.1' => 'oeu', 'Oeu054012.1' => 'oeu', 'Os01g0773600' => 'osa', 'Os02g0741300' => 'osa', 'Os04g0606400' => 'osa', 'Os05g0209100' => 'osa', 'Peaxi162Scf00017g02521' => 'pax', 'Peaxi162Scf00038g02539' => 'pax', 'Peaxi162Scf00468g00724' => 'pax', 'Peaxi162Scf00578g00527' => 'pax', 'PGR083G0321' => 'pgr', 'PGR083G1350' => 'pgr', 'PGR102G2120' => 'pgr', 'PGR142G3221' => 'pgr', 'PGR142G3247' => 'pgr', 'PGSC0003DMG400016278' => 'stu', 'PGSC0003DMG401024473' => 'stu', 'PGSC0003DMG402009189' => 'stu', 'PGSC0003DMG402024473' => 'stu', 'Phvul.003G092101' => 'pvu', 'Phvul.003G138408' => 'pvu', 'Phvul.003G140700' => 'pvu', 'Phvul.003G197300' => 'pvu', 'Phvul.006G033032' => 'pvu', 'Phvul.006G164400' => 'pvu', 'Phvul.008G254800' => 'pvu', 'Phvul.011G127200' => 'pvu', 'Potri.004G132300' => 'ptr', 'Potri.008G007500' => 'ptr', 'Potri.008G160900' => 'ptr', 'Potri.012G076600' => 'ptr', 'Potri.015G071400' => 'ptr', 'Potri.018G141100' => 'ptr', 'Pp3c10_5000' => 'ppa', 'Pp3c10_9960' => 'ppa', 'Pp3c17_13130' => 'ppa', 'Pp3c23_3680' => 'ppa', 'Pp3c24_6140' => 'ppa', 'PRCOL_00001404' => 'pco', 'PRCOL_00004503' => 'pco', 'Prupe.1G027300' => 'ppe', 'Prupe.1G073800' => 'ppe', 'Prupe.3G019700' => 'ppe', 'Prupe.4G080100' => 'ppe', 'Prupe.5G008500' => 'ppe', 'Prupe.5G178500' => 'ppe', 'Psat0s3389g0240' => 'psa', 'Psat1g190520' => 'psa', 'Psat4g056000' => 'psa', 'Psat6g114880' => 'psa', 'Psat7g260960' => 'psa', 'PSO063G4315' => 'pso', 'PSO170G0273' => 'pso', 'PSO210G7663' => 'pso', 'PSO238G0016' => 'pso', 'PSO541G5500' => 'pso', 'PSO675G2638' => 'pso', 'PSO832G4469' => 'pso', 'QL05p058336' => 'qlo', 'QL05p083764' => 'qlo', 'QL06p015131' => 'qlo', 'QL08p016709' => 'qlo', 'QL10p012440' => 'qlo', 'RcHm_v2.0_Chr2g0149781' => 'rch', 'RcHm_v2.0_Chr4g0389601' => 'rch', 'RcHm_v2.0_Chr4g0399181' => 'rch', 'RcHm_v2.0_Chr4g0410691' => 'rch', 'RcHm_v2.0_Chr5g0014001' => 'rch', 'RcHm_v2.0_Chr7g0179631' => 'rch', 'Rhsim02G0157100' => 'rsi', 'Rhsim04G0194400' => 'rsi', 'Rhsim08G0168300' => 'rsi', 'Rhsim08G0248800' => 'rsi', 'Sabra08G0004400' => 'sbr', 'Sabra08G0122800' => 'sbr', 'Sabra10G0195300' => 'sbr', 'Sabra15G0076500' => 'sbr', 'Sabra15G0095400' => 'sbr', 'Sabra15G0096400' => 'sbr', 'Sabra18G0115200' => 'sbr', 'SalBow2G2992' => 'sbo', 'SalBow6G0395' => 'sbo', 'SalBow8G3442' => 'sbo', 'Sc04g0002070' => 'sci', 'Sc05g0006230' => 'sci', 'Sc15g0000960' => 'sci', 'Sc25g0004150' => 'sci', 'Sed0003412' => 'sed', 'Sed0015949' => 'sed', 'Sed0018463' => 'sed', 'Sed0018569' => 'sed', 'Sed0021825' => 'sed', 'SEGI_04373' => 'sgi', 'SEGI_09599' => 'sgi', 'SEGI_13907' => 'sgi', 'SEGI_14140' => 'sgi', 'SEGI_20305' => 'sgi', 'SEGI_26487' => 'sgi', 'SEGI_30578' => 'sgi', 'SEGI_31358' => 'sgi', 'SEGI_33539' => 'sgi', 'SEGI_37430' => 'sgi', 'SGA_v2.0_scaffold101G29783' => 'sas', 'SGA_v2.0_scaffold122G33284' => 'sas', 'SGA_v2.0_scaffold1G00169' => 'sas', 'SGA_v2.0_scaffold2049G54073' => 'sas', 'SGA_v2.0_scaffold467G52027' => 'sas', 'SGA_v2.0_scaffold71G24003' => 'sas', 'SGA_v2.0_scaffold88G27333' => 'sas', 'SHI00587' => 'shi', 'SMO116G0477' => 'smo', 'SMO143G0258' => 'smo', 'SMO145G0001' => 'smo', 'SMO347G0612' => 'smo', 'SMO351G0521' => 'smo', 'SMO366G0001' => 'smo', 'Solyc02g070520.3' => 'sly', 'Solyc03g113900.4' => 'sly', 'Solyc03g123900.3' => 'sly', 'Solyc06g053860.3' => 'sly', 'Solyc06g063260.4' => 'sly', 'Sopen02g019610' => 'spe', 'Sopen03g032950' => 'spe', 'Sopen03g041640' => 'spe', 'Sopen06g018990' => 'spe', 'Sopen06g022710' => 'spe', 'Sp1g23770' => 'spa', 'Sp1g25880' => 'spa', 'Sp1g38230' => 'spa', 'Sp2g08500' => 'spa', 'Sp3g19120' => 'spa', 'TAR362G1217' => 'tar', 'TAR374G0531' => 'tar', 'TAR383G1006' => 'tar', 'TAR622G0389' => 'tar', 'TAR626G1291' => 'tar', 'TAR627G0536' => 'tar', 'THA.LOC104808302' => 'tha', 'THA.LOC104812670' => 'tha', 'THA.LOC104815980' => 'tha', 'THA.LOC104816866' => 'tha', 'THA.LOC104821600' => 'tha', 'Thecc.03G005300' => 'tca', 'Thecc.04G244100' => 'tca', 'Thecc.06G060700' => 'tca', 'Thecc.06G151300' => 'tca', 'Thecc.09G187700' => 'tca', 'Thhalv10003168m.g' => 'esa', 'Thhalv10007084m.g' => 'esa', 'Thhalv10007201m.g' => 'esa', 'Thhalv10011358m.g' => 'esa', 'Thhalv10020383m.g' => 'esa', 'TPR.G15032' => 'tpr', 'TPR.G15710' => 'tpr', 'TPR.G24552' => 'tpr', 'TPR.G25719' => 'tpr', 'TPR.G26655' => 'tpr', 'TPR.G36417' => 'tpr', 'TPR.G37545' => 'tpr', 'TPR.G39997' => 'tpr', 'TPR.G5399' => 'tpr', 'TWI09G0023' => 'twi', 'TWI12G0561' => 'twi', 'TWI18G0562' => 'twi', 'TWI73G0711' => 'twi', 'TWI81G0481' => 'twi', 'unitig_22.g5455' => 'ugi', 'unitig_32.g11005' => 'ugi', 'unitig_32.g11717' => 'ugi', 'unitig_750.g28479' => 'ugi', 'vmacro08401' => 'vma', 'vmacro18408' => 'vma', 'vmacro18409' => 'vma', 'vmacro18755' => 'vma', 'vmacro19358' => 'vma', 'VMungo0540G2252' => 'vmu', 'VMungo0647G0878' => 'vmu', 'VMungo0720G0367' => 'vmu', 'VMungo1215G0019' => 'vmu', 'VMungo1215G0300' => 'vmu', 'VMungo1215G1883' => 'vmu', 'Zm00001eb071480' => 'zma', 'Zm00001eb083420' => 'zma', 'Zm00001eb254180' => 'zma', 'Zm00001eb301940' => 'zma', 'Zm00001eb301950' => 'zma', 'Zm00001eb350710' => 'zma', 'Zm00001eb370020' => 'zma', 'Zm00001eb430470' => 'zma' ) $gf_id = 'HOM05D000979' $gf_types_information = array( 'HOMFAM' => array( 'id' => 'HOMFAM', 'name' => 'Homologous gene family', 'gene_type' => 'coding', 'parent_id' => '', 'ancestry' => 'homology' ), 'ORTHOFAM' => array( 'id' => 'ORTHOFAM', 'name' => 'Orthologous gene family', 'gene_type' => 'coding', 'parent_id' => 'HOMFAM', 'ancestry' => 'orthology' ) ) $gf_types_configuration = array( 'HOMFAM' => array( 'order' => '1', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ), 'ORTHOFAM' => array( 'order' => '2', 'show_parentless_subfamilies' => 'false', 'show_table' => 'true', 'show_orphan' => false ) ) $all_species = array( 'acertr' => array( 'species' => 'acertr', 'common_name' => 'Acer truncatum', 'tax_id' => '47965', 'version' => 'v2.0' ), 'ach' => array( 'species' => 'ach', 'common_name' => 'Actinidia chinensis', 'tax_id' => '3625', 'version' => 'V3.0' ), 'aar' => array( 'species' => 'aar', 'common_name' => 'Aethionema arabicum', 'tax_id' => '228871', 'version' => 'v3.1' ), 'amhyb' => array( 'species' => 'amhyb', 'common_name' => 'Amaranthus hybridus', 'tax_id' => '3565', 'version' => 'v1.0' ), 'atr' => array( 'species' => 'atr', 'common_name' => 'Amborella trichopoda', 'tax_id' => '13333', 'version' => 'JGI v1.0' ), 'aag' => array( 'species' => 'aag', 'common_name' => 'Anthoceros agrestis', 'tax_id' => '41834', 'version' => 'v1.1' ), 'aox' => array( 'species' => 'aox', 'common_name' => 'Aquilegia oxysepala', 'tax_id' => '432649', 'version' => 'v1.0' ), 'aly' => array( 'species' => 'aly', 'common_name' => 'Arabidopsis lyrata', 'tax_id' => '59689', 'version' => 'JGI v2.1' ), 'ath' => array( 'species' => 'ath', 'common_name' => 'Arabidopsis thaliana', 'tax_id' => '3702', 'version' => 'Araport11' ), 'arhy' => array( 'species' => 'arhy', 'common_name' => 'Arachis hypogaea', 'tax_id' => '3818', 'version' => 'v1.0' ), 'ama' => array( 'species' => 'ama', 'common_name' => 'Avicennia marina', 'tax_id' => '82927', 'version' => 'v1.1 20200527' ), 'bvu' => array( 'species' => 'bvu', 'common_name' => 'Beta vulgaris', 'tax_id' => '161934', 'version' => 'EL10_1.0' ), 'bca' => array( 'species' => 'bca', 'common_name' => 'Brassica carinata', 'tax_id' => '52824', 'version' => 'V1.0' ), 'bna' => array( 'species' => 'bna', 'common_name' => 'Brassica napus', 'tax_id' => '3708', 'version' => 'v2.0' ), 'bol' => array( 'species' => 'bol', 'common_name' => 'Brassica oleracea', 'tax_id' => '109376', 'version' => 'v1.0' ), 'bra' => array( 'species' => 'bra', 'common_name' => 'Brassica rapa', 'tax_id' => '3711', 'version' => 'v1.0' ), 'camsi' => array( 'species' => 'camsi', 'common_name' => 'Camellia sinensis var. sinensis', 'tax_id' => '542762', 'version' => 'CSS_ChrLev_20200506' ), 'cansat' => array( 'species' => 'cansat', 'common_name' => 'Cannabis sativa', 'tax_id' => '3483', 'version' => 'cs10' ), 'cru' => array( 'species' => 'cru', 'common_name' => 'Capsella rubella', 'tax_id' => '81985', 'version' => 'JGI v1.1' ), 'can' => array( 'species' => 'can', 'common_name' => 'Capsicum annuum', 'tax_id' => '4072', 'version' => 'Pepper Genome v2.0' ), 'chi' => array( 'species' => 'chi', 'common_name' => 'Cardamine hirsuta', 'tax_id' => '50463', 'version' => 'v1.0' ), 'cpa' => array( 'species' => 'cpa', 'common_name' => 'Carica papaya', 'tax_id' => '3649', 'version' => 'JGI ASGPB0.4' ), 'cfa' => array( 'species' => 'cfa', 'common_name' => 'Carpinus fangiana', 'tax_id' => '176857', 'version' => 'v1.0' ), 'cil' => array( 'species' => 'cil', 'common_name' => 'Carya illinoinensis', 'tax_id' => '32201', 'version' => 'v1.1' ), 'cde' => array( 'species' => 'cde', 'common_name' => 'Ceratophyllum demersum', 'tax_id' => '4428', 'version' => 'v1.0' ), 'cbr' => array( 'species' => 'cbr', 'common_name' => 'Chara braunii', 'tax_id' => '69332', 'version' => 'Cbr1.0' ), 'cqu' => array( 'species' => 'cqu', 'common_name' => 'Chenopodium quinoa', 'tax_id' => '63459', 'version' => 'KAUST v1.0' ), 'cre' => array( 'species' => 'cre', 'common_name' => 'Chlamydomonas reinhardtii', 'tax_id' => '3055', 'version' => 'JGI v5.5' ), 'car' => array( 'species' => 'car', 'common_name' => 'Cicer arietinum L.', 'tax_id' => '3827', 'version' => 'v3.0' ), 'cla' => array( 'species' => 'cla', 'common_name' => 'Citrullus lanatus', 'tax_id' => '3654', 'version' => 'WCG v2.0' ), 'ccl' => array( 'species' => 'ccl', 'common_name' => 'Citrus clementina', 'tax_id' => '85681', 'version' => 'JGI v1.0' ), 'ccan' => array( 'species' => 'ccan', 'common_name' => 'Coffea canephora', 'tax_id' => '49390', 'version' => 'Coffee Genome Hub v1' ), 'col' => array( 'species' => 'col', 'common_name' => 'Corchorus olitorius', 'tax_id' => '93759', 'version' => 'GenBank v1.0' ), 'cav' => array( 'species' => 'cav', 'common_name' => 'Corylus avellana', 'tax_id' => '13451', 'version' => 'v1.0' ), 'cme' => array( 'species' => 'cme', 'common_name' => 'Cucumis melo', 'tax_id' => '3656', 'version' => 'Melonomics v3.6.1' ), 'csa' => array( 'species' => 'csa', 'common_name' => 'Cucumis sativus L.', 'tax_id' => '3659', 'version' => 'v3.0' ), 'dca' => array( 'species' => 'dca', 'common_name' => 'Daucus carota', 'tax_id' => '4039', 'version' => 'JGI v2.0' ), 'din' => array( 'species' => 'din', 'common_name' => 'Davidia involucrata', 'tax_id' => '16924', 'version' => 'v1.0' ), 'dzi' => array( 'species' => 'dzi', 'common_name' => 'Durio zibethinus', 'tax_id' => '66656', 'version' => 'Duzib1.0' ), 'eca' => array( 'species' => 'eca', 'common_name' => 'Erigeron canadensis', 'tax_id' => '72917', 'version' => 'V1.0' ), 'egut' => array( 'species' => 'egut', 'common_name' => 'Erythranthe guttata', 'tax_id' => '4155', 'version' => 'v2.0' ), 'egr' => array( 'species' => 'egr', 'common_name' => 'Eucalyptus grandis', 'tax_id' => '71139', 'version' => 'v2.0' ), 'esa' => array( 'species' => 'esa', 'common_name' => 'Eutrema salsugineum', 'tax_id' => '72664', 'version' => 'v1.0' ), 'fve' => array( 'species' => 'fve', 'common_name' => 'Fragaria vesca', 'tax_id' => '57918', 'version' => 'V4.0.a2' ), 'fan' => array( 'species' => 'fan', 'common_name' => 'Fragaria x ananassa', 'tax_id' => '3747', 'version' => 'V1.0.a1' ), 'gma' => array( 'species' => 'gma', 'common_name' => 'Glycine max', 'tax_id' => '3847', 'version' => 'JGI Wm82.a4.v1' ), 'ghi' => array( 'species' => 'ghi', 'common_name' => 'Gossypium hirsutum', 'tax_id' => '3635', 'version' => 'v2.1' ), 'gra' => array( 'species' => 'gra', 'common_name' => 'Gossypium raimondii', 'tax_id' => '29730', 'version' => 'v2.1' ), 'han' => array( 'species' => 'han', 'common_name' => 'Helianthus annuus', 'tax_id' => '4232', 'version' => 'r1.2' ), 'hma' => array( 'species' => 'hma', 'common_name' => 'Hydrangea macrophylla', 'tax_id' => '23110', 'version' => 'v2.1' ), 'lsa' => array( 'species' => 'lsa', 'common_name' => 'Lactuca sativa', 'tax_id' => '4236', 'version' => 'v8.0' ), 'lonja' => array( 'species' => 'lonja', 'common_name' => 'Lonicera japonica', 'tax_id' => '105884', 'version' => 'v1.0' ), 'lja' => array( 'species' => 'lja', 'common_name' => 'Lotus japonicus', 'tax_id' => '34305', 'version' => 'Lj1.0v1' ), 'lal' => array( 'species' => 'lal', 'common_name' => 'Lupinus albus', 'tax_id' => '3870', 'version' => 'v1.0' ), 'mbi' => array( 'species' => 'mbi', 'common_name' => 'Magnolia biondii', 'tax_id' => '86725', 'version' => 'v1.0' ), 'mdo' => array( 'species' => 'mdo', 'common_name' => 'Malus domestica', 'tax_id' => '3750', 'version' => 'GDDH13 v1.1' ), 'mes' => array( 'species' => 'mes', 'common_name' => 'Manihot esculenta', 'tax_id' => '3983', 'version' => 'v8.1' ), 'mpo' => array( 'species' => 'mpo', 'common_name' => 'Marchantia polymorpha', 'tax_id' => '3197', 'version' => 'JGI v3.1' ), 'mtr' => array( 'species' => 'mtr', 'common_name' => 'Medicago truncatula', 'tax_id' => '3880', 'version' => 'JGI Mt4.0v1' ), 'mco' => array( 'species' => 'mco', 'common_name' => 'Micromonas commoda', 'tax_id' => '296587', 'version' => 'JGI v3.0' ), 'nnu' => array( 'species' => 'nnu', 'common_name' => 'Nelumbo nucifera', 'tax_id' => '4432', 'version' => 'v2.0' ), 'nta' => array( 'species' => 'nta', 'common_name' => 'Nicotiana tabacum', 'tax_id' => '4097', 'version' => 'Edwards2017' ), 'oeu' => array( 'species' => 'oeu', 'common_name' => 'Olea europaea', 'tax_id' => '4146', 'version' => 'v1.0' ), 'osa' => array( 'species' => 'osa', 'common_name' => 'Oryza sativa ssp. japonica', 'tax_id' => '39947', 'version' => 'IRGSP-1.0-2021-05-10' ), 'pso' => array( 'species' => 'pso', 'common_name' => 'Papaver somniferum', 'tax_id' => '3469', 'version' => 'ASM357369v1' ), 'pax' => array( 'species' => 'pax', 'common_name' => 'Petunia axillaris', 'tax_id' => '33119', 'version' => 'Sol Genomics v1.6.2' ), 'pvu' => array( 'species' => 'pvu', 'common_name' => 'Phaseolus vulgaris', 'tax_id' => '3885', 'version' => 'v2.1' ), 'ppa' => array( 'species' => 'ppa', 'common_name' => 'Physcomitrium patens', 'tax_id' => '3218', 'version' => 'JGI v3.3' ), 'psa' => array( 'species' => 'psa', 'common_name' => 'Pisum sativum', 'tax_id' => '3888', 'version' => 'V1.0a' ), 'ptr' => array( 'species' => 'ptr', 'common_name' => 'Populus trichocarpa', 'tax_id' => '3694', 'version' => 'JGI v4.1' ), 'pco' => array( 'species' => 'pco', 'common_name' => 'Prasinoderma coloniale', 'tax_id' => '156133', 'version' => 'v1.0' ), 'ppe' => array( 'species' => 'ppe', 'common_name' => 'Prunus persica', 'tax_id' => '3760', 'version' => 'v2.1' ), 'pgr' => array( 'species' => 'pgr', 'common_name' => 'Punica granatum', 'tax_id' => '22663', 'version' => 'ASM765513v2' ), 'qlo' => array( 'species' => 'qlo', 'common_name' => 'Quercus lobata', 'tax_id' => '97700', 'version' => 'v3.0' ), 'rsi' => array( 'species' => 'rsi', 'common_name' => 'Rhododendron simsii', 'tax_id' => '118357', 'version' => 'v1.0' ), 'rch' => array( 'species' => 'rch', 'common_name' => 'Rosa chinensis', 'tax_id' => '74649', 'version' => 'v2.0' ), 'sbr' => array( 'species' => 'sbr', 'common_name' => 'Salix brachista', 'tax_id' => '2182728', 'version' => 'v1.0' ), 'sbo' => array( 'species' => 'sbo', 'common_name' => 'Salvia bowleyana', 'tax_id' => '424416', 'version' => 'v1.0' ), 'shi' => array( 'species' => 'shi', 'common_name' => 'Sapria himalayana', 'tax_id' => '289637', 'version' => 'v1.0' ), 'spa' => array( 'species' => 'spa', 'common_name' => 'Schrenkiella parvula', 'tax_id' => '98039', 'version' => 'v2.2' ), 'sed' => array( 'species' => 'sed', 'common_name' => 'Sechium edule', 'tax_id' => '184140', 'version' => 'v1.0' ), 'smo' => array( 'species' => 'smo', 'common_name' => 'Selaginella moellendorffii', 'tax_id' => '88036', 'version' => 'v1.0' ), 'sun' => array( 'species' => 'sun', 'common_name' => 'Selenicereus undatus', 'tax_id' => '176265', 'version' => 'v1.0' ), 'sgi' => array( 'species' => 'sgi', 'common_name' => 'Sequoiadendron giganteum', 'tax_id' => '99814', 'version' => 'V2.0' ), 'sci' => array( 'species' => 'sci', 'common_name' => 'Simmondsia chinensis', 'tax_id' => '3999', 'version' => 'sc1' ), 'sly' => array( 'species' => 'sly', 'common_name' => 'Solanum lycopersicum', 'tax_id' => '4081', 'version' => 'ITAG4.0' ), 'spe' => array( 'species' => 'spe', 'common_name' => 'Solanum pennellii', 'tax_id' => '28526', 'version' => 'V2.0' ), 'stu' => array( 'species' => 'stu', 'common_name' => 'Solanum tuberosum', 'tax_id' => '4113', 'version' => 'JGI v4.03' ), 'sas' => array( 'species' => 'sas', 'common_name' => 'Striga asiatica', 'tax_id' => '4170', 'version' => 'v2.02' ), 'tha' => array( 'species' => 'tha', 'common_name' => 'Tarenaya hassleriana', 'tax_id' => '28532', 'version' => 'RefSeq v1' ), 'tca' => array( 'species' => 'tca', 'common_name' => 'Theobroma cacao', 'tax_id' => '3641', 'version' => 'V2.1' ), 'tpr' => array( 'species' => 'tpr', 'common_name' => 'Trifolium pratense', 'tax_id' => '57577', 'version' => 'V2.0' ), 'twi' => array( 'species' => 'twi', 'common_name' => 'Tripterygium wilfordii', 'tax_id' => '458696', 'version' => 'ASM1340144v1' ), 'tar' => array( 'species' => 'tar', 'common_name' => 'Trochodendron aralioides', 'tax_id' => '4407', 'version' => 'v1.0' ), 'ugi' => array( 'species' => 'ugi', 'common_name' => 'Utricularia gibba', 'tax_id' => '13748', 'version' => 'v1.1F' ), 'vma' => array( 'species' => 'vma', 'common_name' => 'Vaccinium macrocarpon', 'tax_id' => '13750', 'version' => 'V1.0' ), 'vpl' => array( 'species' => 'vpl', 'common_name' => 'Vanilla planifolia', 'tax_id' => '51239', 'version' => 'Elo Vpla-A Principal v1.0' ), 'vmu' => array( 'species' => 'vmu', 'common_name' => 'Vigna mungo', 'tax_id' => '3915', 'version' => 'ASM1342719v1' ), 'vvi' => array( 'species' => 'vvi', 'common_name' => 'Vitis vinifera', 'tax_id' => '29760', 'version' => 'Genoscope.12x' ), 'zma' => array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) ) $allow_async_use = true $sidebar_information = array( 'type' => 'gf', 'id' => 'HOM05D000979' ) $data_identifier = 'HOM05D000979' $data_type = 'gf_id' $species_gene_counts = array( 'bna' => (int) 18, 'aar' => (int) 4, 'aag' => (int) 3, 'ach' => (int) 9, 'amhyb' => (int) 3, 'aly' => (int) 5, 'aox' => (int) 6, 'arhy' => (int) 14, 'ath' => (int) 5, 'atr' => (int) 4, 'acertr' => (int) 5, 'cqu' => (int) 9, 'bca' => (int) 16, 'bol' => (int) 8, 'bra' => (int) 8, 'can' => (int) 7, 'cansat' => (int) 4, 'chi' => (int) 5, 'cru' => (int) 5, 'car' => (int) 5, 'cbr' => (int) 4, 'ccan' => (int) 10, 'cde' => (int) 8, 'cfa' => (int) 7, 'ccl' => (int) 4, 'cil' => (int) 5, 'cla' => (int) 4, 'col' => (int) 5, 'cpa' => (int) 8, 'cre' => (int) 2, 'csa' => (int) 4, 'camsi' => (int) 11, 'dca' => (int) 5, 'din' => (int) 7, 'dzi' => (int) 6, 'eca' => (int) 3, 'bvu' => (int) 4, 'egr' => (int) 5, 'fan' => (int) 20, 'fve' => (int) 6, 'gma' => (int) 12, 'ghi' => (int) 12, 'gra' => (int) 6, 'vvi' => (int) 9, 'han' => (int) 6, 'cav' => (int) 6, 'hma' => (int) 2, 'vpl' => (int) 7, 'sun' => (int) 4, 'lal' => (int) 8, 'lonja' => (int) 5, 'lja' => (int) 5, 'lsa' => (int) 6, 'mes' => (int) 6, 'mpo' => (int) 4, 'mbi' => (int) 6, 'mco' => (int) 3, 'mdo' => (int) 11, 'mtr' => (int) 6, 'cme' => (int) 4, 'egut' => (int) 4, 'ama' => (int) 3, 'nta' => (int) 11, 'nnu' => (int) 5, 'oeu' => (int) 5, 'osa' => (int) 4, 'pax' => (int) 4, 'pgr' => (int) 5, 'stu' => (int) 4, 'pvu' => (int) 8, 'ptr' => (int) 6, 'ppa' => (int) 5, 'pco' => (int) 2, 'ppe' => (int) 6, 'psa' => (int) 5, 'pso' => (int) 7, 'qlo' => (int) 5, 'rch' => (int) 6, 'rsi' => (int) 4, 'sbr' => (int) 7, 'sbo' => (int) 3, 'sci' => (int) 4, 'sed' => (int) 5, 'sgi' => (int) 10, 'sas' => (int) 7, 'shi' => (int) 1, 'smo' => (int) 6, 'sly' => (int) 5, 'spe' => (int) 5, 'spa' => (int) 5, 'tar' => (int) 6, 'tha' => (int) 5, 'tca' => (int) 5, 'esa' => (int) 5, 'tpr' => (int) 9, 'twi' => (int) 5, 'ugi' => (int) 4, 'vma' => (int) 5, 'vmu' => (int) 6, 'zma' => (int) 8 ) $gf_gene_species = 'zma' $gf_gene_id = 'Zm00001eb430470' $species_info = array( 'species' => 'zma', 'common_name' => 'Zea mays', 'tax_id' => '4577', 'version' => 'NAM v5.0' ) $local_species = 'zma' $disabled = '' $selected = '' $num_hits = (int) 1